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Please understand, the master clock (like 180/2) is the working clock of EBI interface. That means all the timings on the devices connected to EBI will be multiples of the master clock cycle, such as RAS, CAS pulse. In AT91 products, those timing settings are in form of number of master clock cycles. For example, when master clock is 90MHz and RAS setting is 2, then RAS pulse will be 22.2ns. So if you readjusted master clock or your device model is changed, you will need to recalculate those timing settings. You should be able to find those settings in ns/us in the datasheet of the SDRAM or other devices you choose.
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