Hi,
perhaps this could help you
http://www.sparkfun.com/datasheets/DevTools/SAM7/Your%20Atmel%20Board%20May%20Not%20Be%20Dead.pdfthe better way to return "return the evaluation kit back to its original state ?" is to hold the -jp28 ERASE- pin during 10 sec - turn the power off before !
if you raise TST pin high for 10 seconds (with the PA0, PA1, PA2) all held high - you load the sambaboot loader at the beggining of the Flash it's usefull if you program th e board with SAMBA through the serial port
here I had regroup all you need to know about SAMBA
http://pagesperso-orange.fr/checkeol/zz2/stage_chine/pdf/SAMBA_Full_Guide.pdfI hope helping you,
regards Séb.