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IS there a SAM3 which is pin and software compatible that could replace the AT921SAM7X128 ? Or at lest a SAM3 that requires minor moodification in the board to replace the old processor?
By software compatible I assume you would like to compile with your existing tools (SAM7x) and down load the code. If so, then no, I wouldn't expect the SAM3 to be software compatible, it has a different core.
As far a pin compatible, I don't know, maybe someone else here has replaced a SAM7x with a SAM3 and could tell you.
I have a client that uses the SAM7x128/256/512 versions and they are still able to purchase these parts.
Some of these parts are obsolete but they have recommended replacements.
Check the following link for your specific processor and the recommended replacement part (enter
sam7 in the box and click search):
http://www.atmel.com/quality/quality_general.asp