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The libraries are a set of C source file sparing the time to write low level functions for using the peripherals.
But keep in mind that not only the C code will have to be added to your application. Have a look at the assembly startup files, thet may contain code that the C lib rely on to work. A basic .s startup file provided by IAR or Keil, for example, may not work properly with the libraries.
I'm trying to use Atmel libs for SD card and USB. I could'nt manage to have it work without many adaptations to my application hardware and software. (For the USB, I must say I'm still desperately trying to get a connection).
Denis
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