Hi greenhorn,
there is a GNU toolchain (compiler, linker, assembler, debuger) available which you can use to program this controller. This controller has some very nice download possibilities, including the serial device (x- or y-modem). Perhaps you can use this for your purpose.
To get information how to start, you can take a look of the free available bootloaders. A very important thing, is to understand "How the contoller and its architecture works". Use the "ARM9 technical reference maual" (located for instance at
http://www.atmel.com/dyn/products/other ... ily_id=605) for this.
Before you can start test your code, you need a possibility to download code to your board. Then start programing smal things - LED switching for instance and so on.
Hope this helps,
Edi