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Well you have to initialize the memory controller in AT91BootStrap, and uBoot has to provide the memory configuration to the kernel.
If you get the geometry or timing wrong, things will crash and burn. So look at what you're doing in AT91BootStrap, and uBoot, and assume the default setting aren't working for you.
To solve such problems, you'll need to review, and provide, details of the EXACT parts you are using, and how you are ACTUALLY configuring the parts. Your current question is boundlessly vague in terms of seeking resolution. Please provide pertinent, and specific, details of your board/system.
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