Just a post to say that a bug has probably been introduced in the linux kernel 2.6.32 which prevents the detection of any AT91 boards by SAM-BA.
However a patch has been developed and will be available with the linux kernel 2.6.37 which is not yet stable
Unfortunately this patch does not seem to work correctly (according to my own experience and according to the following post)
Hence I personally would use a kernel prior to version 2.6.32 and it works fine with my at91sam3s board
Microchip in-system programming solution: SAM-BA
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